Publications

2020  |  2019  |  2018  |  2017


2020

Sub-nanometer resolution in single-molecule photoluminescence imaging

B. Yang, G. Chen, A. Ghafoor, Y. Zhang, Y. Zhang, Y. Zhang, Y. Luo, J. Yang, Vahid Sandoghdar, et al.

Nature Photonics, to appear

The point spread function in interferometric scattering microscopy (iSCAT). I. Aberrations in defocusing and axial localization

Reza Gholami Mahmoodabadi, Richard W. Taylor, Martin Kaller, Susann Spindler, Vahid Sandoghdar

arXiv:2006.15332 Preprint

Nano-Optics in 2020 ± 20

Vahid Sandoghdar

Nano Letters 20 (2020) | Journal

Temperature controlled high-throughput magnetic tweezers show striking difference in activation energies of replicating viral RNA-dependent RNA polymerases

Mona Seifert, Pauline van Nies, Flávia S. Papini, Jamie J. Arnold, Minna M. Poranen, Craig E. Cameron, Martin Depken, David Dulin

Nucleic Acids Research 48(10) 5591-5602 (2020) | Journal | PDF

DryMass: handling and analyzing quantitative phase microscopy images of spherical, cell-sized objects

Paul Müller, Gheorghe Cojoc, Jochen Guck

BMC Bioinformatics (21) 221 1-8 (2020) | Journal

High spatiotemporal resolution data from a custom magnetic tweezers instrument

Eugeniu Ostrofet, Flavia S. Papini, David Dulin

Data in Brief 30 105397 (2020) | Journal

Nano-structured alkali-metal vapor cells

Tom F. Cutler, William J. Hamlyn, Kate A. Whittaker, Danielle Pizzey, Ifan G. Hughes, Vahid Sandoghdar, Charles S. Adams

arXiv:2004.10577 (2020) Preprint

Partial cloaking of a gold particle by a single molecule

Johannes Zirkelbach, Benjamin Gmeiner, Jan Renger, Pierre Türschmann, Tobias Utikal, Stephan Götzinger, Vahid Sandoghdar

arXiv:2004.08156 (2020) Preprint

RNA-Induced Conformational Switching and Clustering of G3BP Drive Stress Granule Assembly by Condensation

Jordina Guillén Boixet , Andrii Kopach , Alex S. Holehouse, Sina Wittmann , Marcus Jahnel, Raimund Schlüssler, Kyoohyun Kim, Irmela Trussina , Jie Wang , et al.

Cell 181(2) 346-361 (2020) | Journal

Ensemble-induced strong light-matter coupling of a single quantum emitter

Stefan Schütz, Johannes Schachenmayer, David Hagenmüller, Gavin K. Brennen, Thomas Volz, Vahid Sandoghdar, Thomas W. Ebbesen, Claudiu Genes, Guido Pupillo

Physical Review Letters 124 113602 (2020) | Journal

Roadmap on quantum light spectroscopy

Shaul Mukamel, Matthias Freyberger, Wolfgang Schleich, Marco Bellini, Alessandro Zavatta, Gerd Leuchs, Christine Silberhorn, Robert W. Boyd, Luis Lorenzo Sánchez-Soto, et al.

Journal of Physics B: Atomic, Molecular and Optical Physics; IOP Publishing, Bristol 53 7 (2020) | Journal

Oncogenic signaling alters cell shape and mechanics to facilitate cell division under confinement

Helen K Matthews, Sushila Ganguli, Katarzyna Plak, Anna V Taubenberger, Zaw Win, Max Williamson, Matthieu Piel, Jochen Guck, Buzz Baum

Developmental Cell 52(5) 563-573 (2020) | Journal

Swept source cross-polarized optical coherence tomography for any input polarized light

Gargi Sharma, Shivani Sharma, Katharina Blessing, Georg Hartl, Maximilian Waldner, Kanwarpal Singh

Journal of Optics 22(4) 045301 | Journal

Quantum metamaterials with magnetic response at optical frequencies

Rasoul Alaee Khanghah, Burak Gürlek, Mohammad Albooyeh, Diego-Martin Cano, Vahid Sandoghdar

Physical Review Letters, to appear (2020)

Zebrafish spinal cord repair is accompanied by transient tissue stiffening

Stephanie Möllmert, Maria A. Kharlamova, Tobias Hoche, Anna V. Taubenberger, Shada Abuhattum, Veronika Kuscha, Thomas Kurth, Michael Brand, Jochen Guck

Biophysical Journal 118(2) 448-463 (2020) | Journal

The mechanics of myeloid cells

Kathleen R. Bashant, Nicole Toepfner, Christopher J. Day, Nehal N. Mehta, Mariana J. Kaplan, Charlotte Summers, Jochen Guck, Edwin A Chilvers

Biology of the Cell 112 103-112 (2020) | Journal


2019

High-yield fabrication of DNA and RNA constructs for single molecule force and torque spectroscopy experiments

Flavia S. Papini, Mona Seifert, David Dulin

Nucleic Acids Research 47(22) e144 (2019) | Journal

All fiber polarization insensitive detection for spectrometer based optical coherence tomography using optical switch

David Odeke Otuya, Gargi Sharma, Guillermo J. Tearney, Kanwarpal Singh

OSA Continuum 2(12) 3465-3469 (2019) | Journal | PDF

Molecule-photon interactions in phononic environments

Michael Reitz, Christian Sommer, Burak Gürlek, Vahid Sandoghdar, Diego-Martin Cano, Claudiu Genes

arXiv: 1912.02635 Preprint | PDF

Polyacrylamide Bead Sensors for in vivo Quantification of Cell-Scale Stress in Zebrafish Development

Nicole Träber, Klemens Uhlmann, Salvatore Girardo, Gokul Kesavan, Katrin Wagner, Jens Friedrichs, Ruchi Goswami, K Bai, Michael Brand, et al.

Scientific Reports 9(1) 17031 1-14 (2019) | Journal

Colloidal crystals of compliant microgel beads to study cell migration and mechanosensitivity in 3D

Katrin Wagner, Salvatore Girardo, Ruchi Goswami, Gonzalo Rosso, Elke Ulbricht, Paul Müller, Despina Soteriou, Nicole Träber, Jochen Guck

Soft Matter 15(47) 9776-9787 (2019) | Journal | PDF

CASP1 variants influence subcellular caspase-1 localization, pyroptosome formation, pro-inflammatory cell death and macrophage deformability

Franz Kapplusch, Felix Schulze, Sabrina Rabe-Matschewsky, Susanne Russ, Maik Herbig, Michael Christian Heymann, Katharina Schoepf , Robert Stein, Ursula Range, et al.

Clinical Immunology 208 108232 (2019) | Journal

Cell Mechanics Based Computational Classification of Red Blood Cells Via Unsupervised Machine Intelligence Applied to Morpho-Rheological Markers

Yan Ge, Philipp Rosenddahl, Claudio Duran, Sara Ciucci, Nicole Töpfner, Jochen Guck, Carlo Vittorio Cannistraci

IEEE/ACM Transactions on Computational Biology and Bioinformatics (2019) | Journal

Low cost scalable monolithic common path probe design for the application in endoscopic optical coherence tomography

Katharina Blessing, Shivani Sharma, Alexander Gumann, Kanwarpal Singh

Engineering Research Express 1(2) 025008 (2019) | Journal

Mechanical changes of peripheral nerve tissue microenvironment and their structural basis during development

Gonzalo Rosso, Jochen Guck

APL Bioengineering 3(3) 036107 (2019) | Journal

Some thoughts on the future of cell mechanics

Jochen Guck

Biophysical Review 11(15) 667-670 (2019) | Journal

nanite: using machine learning to assess the quality of atomic force microscopy-enabled nano-indentation data

Paul Müller, Shada Abuhattum Hofemeier, Stephanie Möllmert, Elke Ulbricht, Anna V Taubenberger, Jochen Guck

BMC Bioinformatics (20) 465 (2019) | Journal | PDF

3D Microenvironment Stiffness Regulates Tumor Spheroid Growth and Mechanics via p21 and ROCK

Anna V. Taubenberger, Salvatore Girardo, Nicole Träber, Elisabeth Fischer-Friedrich, Martin Kräter, Katrin Wagner, Thomas Kurth, Isabel Richter, Barbara Haller, et al.

Advanced Biosystems 3(9) 1900128 (2019) | Journal

Effects of rigosertib on the osteo-hematopoietic niche in myelodysplastic syndromes

Ekaterina Balaian, Heike Weidner, Manja Wobus, Ulrike Baschant, Angela Jacobi, Anna Mies, Martin Bornhäuser, Jochen Guck, Lorenz C Hofbauer, et al.

Annals of Hematology 98(9) 2063-2072 (2019) | Journal

Interferometric Scattering (iSCAT) Microscopy & Related Techniques

Richard W. Taylor, Vahid Sandoghdar

Label-Free Super-Resolution Microscopy 25-65 (2019) | Book Chapter

Coherent nonlinear optics of quantum emitters in nanophotonic waveguides

Pierre Türschmann, Hanna Le Jeannic, Signe F. Simonsen, Harald Haakh, Stephan Götzinger, Vahid Sandoghdar, Peter Lodahl, Nir Rotenberg

Nanophotonics 8 1641-1657 (2019) | Journal

Interferometric Scattering Microscopy: Seeing Single Nanoparticles and Molecules via Rayleigh Scattering

Richard W. Taylor, Vahid Sandoghdar

Nano Letters 19 4827-4835 (2019) | Journal

High-Throughput Microfluidic Characterization of Erythrocyte Shapes and Mechanical Variability

Felix Reichel, Johannes Mauer, Ahmad Ahsan Nawaz, Gerhard Gompper, Jochen Guck, Dmitry A. Fedosov

Biophysical Journal 117(1) 14-24 (2019) | Journal

Coherent coupling of single molecules to on-chip ring resonators

Dominik Rattenbacher, Alexey Shkarin, Jan Renger, Tobias Utikal, Stephan Götzinger, Vahid Sandoghdar

New Journal of Physics 21 062002 (2019) | Journal

Analysis of biomechanical properties of hematopoietic stem and progenitor cells with Real-Time Deformability Cytometry

Angela Jacobi, Philipp Rosendahl, Martin Kräter, Marta Urbanska, Maik Herbig, Jochen Guck

Methods in Molecular Biology 2017 135-148 (2019) | Book Chapter

Electrically driven single-photon superradiance from molecular chains in a plasmonic nanocavity

Yang Luo, Gong Chen, Yang Zhang, Li Zhang, Yunjie Yu, Fanfang Kong, Xiaojun Tian, Yao Zhang, Chongxin Shan, et al.

Physical Review Letters 122 233901 (2019) | Journal

Morpho-Rheological Fingerprinting of Rod Photoreceptors Using Real-Time Deformability Cytometry

Tiago Santos-Ferreira, Maik Herbig, Oliver Otto, Madalena Carido, Mike O. Karl, Stylianos Michalakis, Jochen Guck, Marius Ader

Cytometry A 95(11) 1145-1157 (2019) | Journal | PDF

Nanoprinting organic molecules at the quantum level

Claudio U. Hail, Christian Höller, Korenobu Matsuzaki, Patrik Rohner, Jan Renger, Vahid Sandoghdar, Dimos Poulikakos, Hadi Eghlidi

Nature Communications 10 1880 (2019) | Journal

Spheroid Culture of Mesenchymal Stromal Cells Results in Morphorheological Properties Appropriate for Improved Microcirculation

Stefanie Tietze, Martin Kräter, Angela Jacobi, Anna Taubenberger, Maik Herbig, Rebekka Wehner, Marc Schmitz, Oliver Otto, Catrin List, et al.

Advanced Science 6(8) 1802104 (2019) | Journal | PDF

Interferometric scattering microscopy reveals microsecond nanoscopic protein motion on a live cell membrane

Richard W. Taylor, Reza Gholami Mahmoodabadi, Verena Rauschenberger, Andreas Giessl, Alexandra Schambony, Vahid Sandoghdar

Nature Photonics 13 480-487 (2019) | Journal

Turning a molecule into a coherent two-level quantum system

Daqing Wang, Hrishikesh Kelkar, Diego-Martin Cano, Dominik Rattenbacher, Alexey Shkarin, Tobias Utikal, Stephan Götzinger, Vahid Sandoghdar

Nature Physics 15 483-489 (2019) | Journal

High throughput magnetic tweezers to characterize inhibitors of RNA virus replication

David Dulin

Virologie 23(6) 373-375 (2019) | Journal


2018

Label-Free Imaging of Single Proteins Secreted from Living Cells via ISCAT Microscopy

André Gemeinhardt, Matthew Paul McDonald, Katharina König, Michael Aigner, Andreas Mackensen, Vahid Sandoghdar

Journal of Visualized Experiments e58486 (2018) | Journal

Correction-free force calibration for magnetic tweezers experiments

Eugen Ostrofet, Flavia Stal Papini, David Dulin

Scientific Reports 8 15920 (2018) | Journal

High-Speed Microscopy of Diffusion in Pore-Spanning Lipid Membranes

Susann Spindler, Jeremias Sibold, Reza Gholami Mahmoodabadi, Claudia Steinem, Vahid Sandoghdar

Nano Letters 18 5262-5271 (2018) | Journal

Pausing controls branching between productive and non-productive pathways during initial transcription in bacteria

David Dulin, David L. V. Bauer, Anssi M. Malinen, Jacob J. W. Bakermans, Martin Kaller, Zakia Morichaud, Ivan Petushkov, Martin Depken, Konstantin Brodolin, et al.

Nature Communications 9 1478 (2018) | Journal

Manipulation of Quenching in Nanoantenna–Emitter Systems Enabled by External Detuned Cavities: A Path to Enhance Strong-Coupling

Burak Gürlek, Vahid Sandoghdar, Diego-Martin Cano

ACS Photonics 5 456-461 (2018) | Journal

Visualizing single-cell secretion dynamics with single protein sensitivity

Matthew Paul McDonald, André Gemeinhardt, Katharina König, Marek Piliarik, Stefanie Schaffer, Simon Völkl, Andreas Mackensen, Vahid Sandoghdar

Nano Letters 18 513-519 (2018) | Journal


2017

Kinetics of CrPV and HCV IRES-mediated eukaryotic translation using single-molecule fluorescence microscopy

Olivier Bugaud, Nathalie Barbier, Helene Chommy, Nicolas Fiszman, Antoine Le Gall, David Dulin, Matthieu Saguy, Nathalie Westbrook, Karen Perronet, et al.

RNA 23(11) 1626-1635 (2017) | Journal

Signatures of Nucleotide Analog Incorporation by an RNA-Dependent RNA Polymerase Revealed Using High-Throughput Magnetic Tweezers

David Dulin, Jamie J. Arnold, Theo van Laar, Hyung-Suk Oh, Cheri Lee, Angela L. Perkins, Daniel A. Harki, Martin Depken, Craig E. Cameron, et al.

Cell Reports 21(4) 1063-1076 (2017) | Journal

MPL Newsletter

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Current issue: Newsletter No 15 - April 2020

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